Variant report

Variant	rs16885156
Chromosome Location	chr6:75319556-75319557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10498899	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12111118	0.80[ASN][1000 genomes]
rs1317335	0.82[ASN][1000 genomes]
rs16885111	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16885127	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16885136	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885146	0.82[ASN][1000 genomes]
rs16885150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885151	0.82[ASN][1000 genomes]
rs16885219	0.94[ASN][1000 genomes]
rs16885245	0.89[ASN][1000 genomes]
rs16885249	0.89[ASN][1000 genomes]
rs16885255	0.89[ASN][1000 genomes]
rs16885278	0.89[ASN][1000 genomes]
rs16885284	0.84[ASN][1000 genomes]
rs16885290	0.84[ASN][1000 genomes]
rs16885295	0.84[ASN][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs58081408	0.89[ASN][1000 genomes]
rs59720369	0.89[ASN][1000 genomes]
rs61335781	0.89[ASN][1000 genomes]
rs6904990	0.89[ASN][1000 genomes]
rs6906569	0.89[ASN][1000 genomes]
rs6918256	0.89[ASN][1000 genomes]
rs6940669	0.89[ASN][1000 genomes]
rs73459828	0.89[ASN][1000 genomes]
rs73459831	0.89[ASN][1000 genomes]
rs73459834	0.89[ASN][1000 genomes]
rs73459836	0.89[ASN][1000 genomes]
rs73459843	0.89[ASN][1000 genomes]
rs73459849	0.89[ASN][1000 genomes]
rs73459850	0.89[ASN][1000 genomes]
rs73459852	0.89[ASN][1000 genomes]
rs73459857	0.87[ASN][1000 genomes]
rs73459859	0.89[ASN][1000 genomes]
rs868944	0.82[ASN][1000 genomes]
rs9791369	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
2	chr6:75316600-75320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75316600-75320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:75316600-75322200	Enhancers	Osteobl	bone
5	chr6:75317000-75321400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75317000-75322200	Enhancers	Hela-S3	cervix
7	chr6:75317200-75322200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75318000-75319600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:75318800-75320600	Enhancers	NHLF	lung
10	chr6:75318800-75320800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:75318800-75321200	Enhancers	NHDF-Ad	bronchial
12	chr6:75319000-75320000	Enhancers	HSMMtube	muscle
13	chr6:75319000-75320200	Enhancers	NH-A	brain
14	chr6:75319000-75320600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:75319000-75320600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:75319000-75320600	Enhancers	HSMM	muscle
17	chr6:75319000-75321600	Enhancers	A549	lung
18	chr6:75319200-75320600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:75319400-75320200	Enhancers	Adipose Nuclei	Adipose
20	chr6:75319400-75320600	Enhancers	HMEC	breast

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