Variant report

Variant	rs16885278
Chromosome Location	chr6:75367182-75367183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10498899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885111	1.00[EUR][1000 genomes]
rs16885127	1.00[JPT][hapmap]
rs16885136	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16885150	0.87[ASN][1000 genomes]
rs16885156	0.89[ASN][1000 genomes]
rs16885219	0.94[ASN][1000 genomes]
rs16885245	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885249	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885255	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885284	0.96[ASN][1000 genomes]
rs16885290	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16885295	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16885371	0.88[ASN][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs4269337	0.88[ASN][1000 genomes]
rs58081408	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59720369	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61335781	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6904990	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6906569	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918256	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6940669	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73457880	0.86[AFR][1000 genomes]
rs73459828	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459831	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459834	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459836	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459843	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459849	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459850	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459852	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459857	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73459859	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9791369	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1027029	chr6:75364848-75417967	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015675	chr6:75365189-75422887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75360200-75367800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75363000-75367600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75363800-75369200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:75366000-75368600	Enhancers	Osteobl	bone
5	chr6:75366200-75368000	Enhancers	HSMM	muscle
6	chr6:75366400-75367200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:75366400-75367800	Enhancers	Hela-S3	cervix
8	chr6:75366400-75368400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:75366600-75367600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:75366800-75367200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:75366800-75367400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:75367000-75367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:75367000-75368000	Enhancers	HSMMtube	muscle
14	chr6:75367000-75368000	Enhancers	NHDF-Ad	bronchial

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