Variant report

Variant	rs73457880
Chromosome Location	chr6:75347835-75347836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16885278	0.86[AFR][1000 genomes]
rs57237564	1.00[AMR][1000 genomes]
rs59377726	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60223772	1.00[AMR][1000 genomes]
rs73455996	1.00[AMR][1000 genomes]
rs73464042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464062	1.00[AMR][1000 genomes]
rs73466008	1.00[AMR][1000 genomes]
rs73466015	1.00[AMR][1000 genomes]
rs73466035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75347200-75349000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:75347200-75349000	Enhancers	NHDF-Ad	bronchial
3	chr6:75347400-75349000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:75347400-75349000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:75347600-75348400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:75347600-75348400	Enhancers	Osteobl	bone
7	chr6:75347600-75348600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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