Variant report

Variant	rs16885219
Chromosome Location	chr6:75342952-75342953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10498899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10498902	1.00[EUR][1000 genomes]
rs16885127	1.00[JPT][hapmap]
rs16885136	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16885150	0.93[ASN][1000 genomes]
rs16885156	0.94[ASN][1000 genomes]
rs16885245	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885249	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885255	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885278	0.94[ASN][1000 genomes]
rs16885284	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885290	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885295	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885371	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16885520	1.00[AFR][1000 genomes]
rs16885551	1.00[JPT][hapmap]
rs34733408	1.00[AFR][1000 genomes]
rs4269337	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58081408	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59720369	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61335781	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6904990	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906569	0.94[ASN][1000 genomes]
rs6918256	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940669	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459828	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459831	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459834	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459836	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459843	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459849	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459850	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459852	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73459857	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73459859	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73757947	1.00[EUR][1000 genomes]
rs73757948	1.00[EUR][1000 genomes]
rs73757949	1.00[EUR][1000 genomes]
rs73757950	1.00[EUR][1000 genomes]
rs73757951	1.00[EUR][1000 genomes]
rs73757952	1.00[EUR][1000 genomes]
rs9791369	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75341000-75343600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75341200-75343000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75342000-75347200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:75342000-75347600	Weak transcription	Osteobl	bone
5	chr6:75342800-75347600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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