Variant report

Variant	rs34733408
Chromosome Location	chr6:75460421-75460422
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10498899	1.00[AFR][1000 genomes]
rs1105160	0.82[ASN][1000 genomes]
rs16885219	1.00[AFR][1000 genomes]
rs16885245	1.00[AFR][1000 genomes]
rs16885249	1.00[AFR][1000 genomes]
rs16885371	1.00[AFR][1000 genomes]
rs16885520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2105121	0.82[ASN][1000 genomes]
rs4269337	1.00[AFR][1000 genomes]
rs869064	0.82[ASN][1000 genomes]
rs945817	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75458400-75460800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75458600-75460600	Enhancers	HMEC	breast
3	chr6:75458600-75460800	Enhancers	Colon Smooth Muscle	Colon
4	chr6:75459000-75460600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:75459000-75460600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75459000-75461000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:75459200-75460600	Enhancers	HUVEC	blood vessel
8	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
9	chr6:75459600-75460600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:75459600-75460600	Enhancers	NHEK	skin
11	chr6:75459800-75465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:75460200-75460600	Flanking Active TSS	Hela-S3	cervix
13	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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