Variant report

Variant	rs6906569
Chromosome Location	chr6:75354693-75354694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10498899	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885136	0.87[ASN][1000 genomes]
rs16885150	0.87[ASN][1000 genomes]
rs16885156	0.89[ASN][1000 genomes]
rs16885219	0.94[ASN][1000 genomes]
rs16885245	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885249	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885255	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885278	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885284	0.96[ASN][1000 genomes]
rs16885290	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16885295	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16885371	0.88[ASN][1000 genomes]
rs4269337	0.88[ASN][1000 genomes]
rs58081408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59377726	0.85[AFR][1000 genomes]
rs59720369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61335781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6904990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6940669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459836	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73459859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9791369	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75353800-75355800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75354200-75355400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:75354200-75355800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:75354200-75355800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:75354200-75355800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:75354200-75356000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:75354400-75355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:75354400-75355600	Enhancers	Osteobl	bone
9	chr6:75354400-75355800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:75354600-75355200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:75354600-75355600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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