Variant report

Variant	rs73757947
Chromosome Location	chr6:75462821-75462822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75461808..75463974-chr6:75914243..75916107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10498899	1.00[EUR][1000 genomes]
rs10498902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663829	0.84[AMR][1000 genomes]
rs12664096	0.84[AMR][1000 genomes]
rs12665702	0.84[AMR][1000 genomes]
rs16885219	1.00[EUR][1000 genomes]
rs16885245	1.00[EUR][1000 genomes]
rs16885249	1.00[EUR][1000 genomes]
rs16885255	1.00[EUR][1000 genomes]
rs16885284	1.00[EUR][1000 genomes]
rs16885290	1.00[EUR][1000 genomes]
rs16885295	1.00[EUR][1000 genomes]
rs58081408	1.00[EUR][1000 genomes]
rs58672023	0.81[AFR][1000 genomes]
rs59720369	1.00[EUR][1000 genomes]
rs61335781	1.00[EUR][1000 genomes]
rs6904990	1.00[EUR][1000 genomes]
rs6918256	1.00[EUR][1000 genomes]
rs6940669	1.00[EUR][1000 genomes]
rs73459828	1.00[EUR][1000 genomes]
rs73459831	1.00[EUR][1000 genomes]
rs73459834	1.00[EUR][1000 genomes]
rs73459836	1.00[EUR][1000 genomes]
rs73459843	1.00[EUR][1000 genomes]
rs73459849	1.00[EUR][1000 genomes]
rs73459850	1.00[EUR][1000 genomes]
rs73459852	1.00[EUR][1000 genomes]
rs73459857	1.00[EUR][1000 genomes]
rs73459859	1.00[EUR][1000 genomes]
rs73757948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73757949	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73757950	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73757951	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73757952	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3322204	chr6:75462630-75462891	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
2	chr6:75459800-75465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75460800-75467600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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