Variant report

Variant	rs16885151
Chromosome Location	chr6:75316970-75316971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75315280..75317355-chr6:75323555..75325158,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12111118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1317335	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885136	0.83[ASN][1000 genomes]
rs16885146	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885150	0.83[ASN][1000 genomes]
rs16885156	0.82[ASN][1000 genomes]
rs73757906	0.89[EUR][1000 genomes]
rs868944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:75313000-75317400	Enhancers	HSMMtube	muscle
3	chr6:75315200-75317200	Enhancers	NHEK	skin
4	chr6:75315200-75318000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:75315400-75318000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:75315400-75318400	Enhancers	NHLF	lung
7	chr6:75315600-75317000	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:75315800-75317400	Enhancers	Adipose Nuclei	Adipose
9	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
10	chr6:75316000-75317400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:75316000-75317600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:75316000-75318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:75316200-75317000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:75316400-75317000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:75316400-75317200	Enhancers	Colon Smooth Muscle	Colon
16	chr6:75316400-75318400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:75316600-75318000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:75316600-75318000	Enhancers	HMEC	breast
19	chr6:75316600-75318000	Enhancers	NH-A	brain
20	chr6:75316600-75318400	Enhancers	HSMM	muscle
21	chr6:75316600-75318400	Enhancers	NHDF-Ad	bronchial
22	chr6:75316600-75320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:75316600-75320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:75316600-75322200	Enhancers	Osteobl	bone
25	chr6:75316800-75317000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:75316800-75317000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:75316800-75317000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:75316800-75317000	Flanking Active TSS	Hela-S3	cervix
29	chr6:75316800-75317200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:75316800-75317200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:75316800-75317200	Flanking Active TSS	A549	lung
32	chr6:75316800-75317200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:75316800-75318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:75316800-75318400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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