Variant report
| Variant | rs9447412 |
|---|---|
| Chromosome Location | chr6:75721730-75721731 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10943232 | 0.89[AMR][1000 genomes] |
| rs11964481 | 1.00[AMR][1000 genomes] |
| rs13437111 | 1.00[CEU][hapmap] |
| rs16886197 | 1.00[CEU][hapmap] |
| rs2300791 | 1.00[CEU][hapmap] |
| rs2300794 | 1.00[CEU][hapmap] |
| rs2353250 | 1.00[EUR][1000 genomes] |
| rs2883118 | 1.00[CEU][hapmap] |
| rs4266465 | 0.81[AMR][1000 genomes] |
| rs4388259 | 1.00[CEU][hapmap] |
| rs4406194 | 1.00[EUR][1000 genomes] |
| rs4473827 | 1.00[AMR][1000 genomes] |
| rs545588 | 1.00[CEU][hapmap] |
| rs560250 | 1.00[CEU][hapmap] |
| rs658592 | 1.00[CEU][hapmap] |
| rs6907120 | 1.00[AMR][1000 genomes] |
| rs6932000 | 1.00[CEU][hapmap] |
| rs7738809 | 1.00[CEU][hapmap] |
| rs7743883 | 1.00[CEU][hapmap] |
| rs7749000 | 1.00[CEU][hapmap] |
| rs7754400 | 1.00[CEU][hapmap] |
| rs7755906 | 1.00[CEU][hapmap] |
| rs7760457 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7772503 | 1.00[CEU][hapmap] |
| rs7775765 | 1.00[CEU][hapmap] |
| rs7776027 | 1.00[CEU][hapmap] |
| rs9293988 | 1.00[CEU][hapmap] |
| rs9293991 | 1.00[EUR][1000 genomes] |
| rs9443119 | 1.00[EUR][1000 genomes] |
| rs9443130 | 0.89[AMR][1000 genomes] |
| rs9443133 | 1.00[AMR][1000 genomes] |
| rs9443135 | 1.00[AMR][1000 genomes] |
| rs9443136 | 1.00[EUR][1000 genomes] |
| rs9443137 | 1.00[EUR][1000 genomes] |
| rs9447317 | 1.00[CEU][hapmap] |
| rs9447370 | 1.00[CEU][hapmap] |
| rs9447413 | 1.00[EUR][1000 genomes] |
| rs9447420 | 0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830696 | chr6:75538316-75734609 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv436512 | chr6:75715638-75726015 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 3 | esv12306 | chr6:75718864-75722640 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| 4 | esv3496425 | chr6:75719632-75724530 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 5 | esv3496426 | chr6:75719982-75724280 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 6 | esv3496427 | chr6:75719982-75724280 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 7 | esv12531 | chr6:75721030-75722640 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75721400-75722000 | Enhancers | Stomach Smooth Muscle | stomach |
| 2 | chr6:75721600-75721800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 3 | chr6:75721600-75722000 | Enhancers | Duodenum Smooth Muscle | Duodenum |
