Variant report

Variant	rs6934506
Chromosome Location	chr6:75713970-75713971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4235891	1.00[EUR][1000 genomes]
rs6453807	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914245	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918451	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6931257	0.82[ASN][1000 genomes]
rs9293991	0.91[ASN][1000 genomes]
rs9341507	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443134	1.00[EUR][1000 genomes]
rs9443136	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9447400	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9447410	0.96[ASN][1000 genomes]
rs9447420	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv970047	chr6:75713017-75721589	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75703000-75716200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75707800-75721600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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