Variant report

Variant	rs56978570
Chromosome Location	chr6:75787633-75787634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10046165	1.00[EUR][1000 genomes]
rs10046211	1.00[EUR][1000 genomes]
rs10223595	1.00[EUR][1000 genomes]
rs10943232	1.00[EUR][1000 genomes]
rs10943233	1.00[EUR][1000 genomes]
rs11964481	1.00[EUR][1000 genomes]
rs35710072	1.00[EUR][1000 genomes]
rs36002196	1.00[EUR][1000 genomes]
rs4235892	1.00[EUR][1000 genomes]
rs4266465	1.00[EUR][1000 genomes]
rs4292495	1.00[EUR][1000 genomes]
rs4473827	1.00[EUR][1000 genomes]
rs56118316	1.00[EUR][1000 genomes]
rs58333285	1.00[EUR][1000 genomes]
rs61396810	1.00[EUR][1000 genomes]
rs61413320	1.00[EUR][1000 genomes]
rs61544138	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6453814	1.00[EUR][1000 genomes]
rs6903588	1.00[EUR][1000 genomes]
rs6906046	1.00[EUR][1000 genomes]
rs6907120	1.00[EUR][1000 genomes]
rs6909123	1.00[EUR][1000 genomes]
rs6911004	1.00[EUR][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs6921378	1.00[EUR][1000 genomes]
rs6931257	1.00[EUR][1000 genomes]
rs7747708	1.00[EUR][1000 genomes]
rs7754758	1.00[EUR][1000 genomes]
rs7766168	1.00[EUR][1000 genomes]
rs7772904	1.00[EUR][1000 genomes]
rs9293993	1.00[EUR][1000 genomes]
rs9293994	1.00[EUR][1000 genomes]
rs9293995	1.00[EUR][1000 genomes]
rs9293996	1.00[EUR][1000 genomes]
rs9352183	1.00[EUR][1000 genomes]
rs9443109	1.00[EUR][1000 genomes]
rs9443130	1.00[EUR][1000 genomes]
rs9443133	1.00[EUR][1000 genomes]
rs9443135	1.00[EUR][1000 genomes]
rs9443151	1.00[EUR][1000 genomes]
rs9443152	1.00[EUR][1000 genomes]
rs9447409	1.00[EUR][1000 genomes]
rs9447441	1.00[EUR][1000 genomes]
rs9447443	1.00[EUR][1000 genomes]
rs9447444	1.00[EUR][1000 genomes]
rs9447446	1.00[EUR][1000 genomes]
rs9447448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022377	chr6:75762463-75919592	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv538309	chr6:75762463-75919592	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv830697	chr6:75763095-75915029	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75772600-75793200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75782200-75789800	Weak transcription	HSMM	muscle
3	chr6:75782200-75790600	Weak transcription	NHLF	lung
4	chr6:75782600-75794600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:75783600-75792800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:75784200-75789200	Weak transcription	Osteobl	bone
7	chr6:75785400-75794600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:75786000-75789400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:75786000-75793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:75786000-75793000	Weak transcription	HMEC	breast
11	chr6:75786000-75794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:75786400-75788600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:75786400-75793200	Weak transcription	NHEK	skin
14	chr6:75787400-75787800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:75787400-75789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:75787600-75787800	Enhancers	Adipose Nuclei	Adipose
17	chr6:75787600-75791600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:75787600-75794400	Weak transcription	Aorta	Aorta

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