Variant report

Variant	rs61396810
Chromosome Location	chr6:75601315-75601316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10223595	1.00[EUR][1000 genomes]
rs10943232	1.00[EUR][1000 genomes]
rs10943233	1.00[EUR][1000 genomes]
rs11964481	1.00[EUR][1000 genomes]
rs2485450	1.00[EUR][1000 genomes]
rs2502456	1.00[EUR][1000 genomes]
rs2502459	1.00[EUR][1000 genomes]
rs2502541	1.00[EUR][1000 genomes]
rs4235892	1.00[EUR][1000 genomes]
rs4266465	1.00[EUR][1000 genomes]
rs4292495	1.00[EUR][1000 genomes]
rs4473827	1.00[EUR][1000 genomes]
rs56118316	1.00[EUR][1000 genomes]
rs56978570	1.00[EUR][1000 genomes]
rs57413481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59360261	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6903588	1.00[EUR][1000 genomes]
rs6907120	1.00[EUR][1000 genomes]
rs6911004	1.00[EUR][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs6921378	1.00[EUR][1000 genomes]
rs6931257	1.00[EUR][1000 genomes]
rs73456147	1.00[EUR][1000 genomes]
rs7747708	1.00[EUR][1000 genomes]
rs7754758	1.00[EUR][1000 genomes]
rs7772904	1.00[EUR][1000 genomes]
rs9352183	1.00[EUR][1000 genomes]
rs9443109	1.00[EUR][1000 genomes]
rs9443130	1.00[EUR][1000 genomes]
rs9443133	1.00[EUR][1000 genomes]
rs9443135	1.00[EUR][1000 genomes]
rs9447341	1.00[EUR][1000 genomes]
rs9447342	1.00[EUR][1000 genomes]
rs9447409	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1032153	chr6:75590017-75625051	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75600400-75602000	Enhancers	NHLF	lung
2	chr6:75600800-75601400	Enhancers	HSMMtube	muscle
3	chr6:75600800-75601600	Enhancers	Adipose Nuclei	Adipose
4	chr6:75600800-75601600	Enhancers	Fetal Muscle Leg	muscle
5	chr6:75600800-75601600	Enhancers	Fetal Stomach	stomach
6	chr6:75600800-75601800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:75600800-75602000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:75600800-75602000	Enhancers	Fetal Kidney	kidney
9	chr6:75600800-75602000	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:75600800-75602200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:75600800-75602200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:75600800-75602200	Enhancers	Fetal Lung	lung
13	chr6:75600800-75602600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:75600800-75602800	Enhancers	Osteobl	bone
15	chr6:75601000-75601400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:75601000-75601400	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:75601000-75601400	Enhancers	HSMM	muscle
18	chr6:75601000-75601600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:75601000-75601600	Enhancers	Colon Smooth Muscle	Colon
20	chr6:75601200-75601400	Flanking Active TSS	Ovary	ovary
21	chr6:75601200-75601400	Enhancers	NHDF-Ad	bronchial
22	chr6:75601200-75601600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:75601200-75601800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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