Variant report

Variant	rs9443109
Chromosome Location	chr6:75600085-75600086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10223595	1.00[EUR][1000 genomes]
rs10943232	1.00[EUR][1000 genomes]
rs10943233	1.00[EUR][1000 genomes]
rs11964481	1.00[EUR][1000 genomes]
rs2485450	1.00[EUR][1000 genomes]
rs2502456	1.00[EUR][1000 genomes]
rs2502459	1.00[EUR][1000 genomes]
rs2502541	1.00[EUR][1000 genomes]
rs4235892	1.00[EUR][1000 genomes]
rs4266465	1.00[EUR][1000 genomes]
rs4292495	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4473827	1.00[EUR][1000 genomes]
rs56118316	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56978570	1.00[EUR][1000 genomes]
rs57413481	1.00[EUR][1000 genomes]
rs59360261	1.00[EUR][1000 genomes]
rs61396810	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6903588	1.00[EUR][1000 genomes]
rs6907120	1.00[EUR][1000 genomes]
rs6911004	1.00[EUR][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs6921378	1.00[EUR][1000 genomes]
rs6931257	1.00[EUR][1000 genomes]
rs73456147	1.00[EUR][1000 genomes]
rs7747708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754758	1.00[EUR][1000 genomes]
rs7772904	1.00[EUR][1000 genomes]
rs9352183	1.00[EUR][1000 genomes]
rs9443130	1.00[EUR][1000 genomes]
rs9443133	1.00[EUR][1000 genomes]
rs9443135	1.00[EUR][1000 genomes]
rs9447341	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9447409	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757179	chr6:75525739-75625251	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759443	chr6:75525739-75625251	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886172	chr6:75527856-75600804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv886173	chr6:75527856-75610722	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv886175	chr6:75536940-75610722	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886177	chr6:75539434-75600804	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886178	chr6:75539434-75610722	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv603761	chr6:75542717-75600804	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv886179	chr6:75551717-75600804	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886180	chr6:75551717-75610722	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1032153	chr6:75590017-75625051	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75589600-75601000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:75598800-75600800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:75598800-75601000	Weak transcription	Ovary	ovary
4	chr6:75599600-75600400	Weak transcription	NHLF	lung
5	chr6:75599800-75600800	Weak transcription	Osteobl	bone

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