Variant report

Variant	rs2485450
Chromosome Location	chr6:75461040-75461041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2485069	1.00[EUR][1000 genomes]
rs2502456	1.00[EUR][1000 genomes]
rs2502459	1.00[EUR][1000 genomes]
rs2502541	1.00[EUR][1000 genomes]
rs2992982	1.00[EUR][1000 genomes]
rs4292495	1.00[EUR][1000 genomes]
rs57413481	1.00[EUR][1000 genomes]
rs59360261	1.00[EUR][1000 genomes]
rs61396810	1.00[EUR][1000 genomes]
rs6453794	1.00[EUR][1000 genomes]
rs6920790	1.00[EUR][1000 genomes]
rs73456147	1.00[EUR][1000 genomes]
rs73757907	1.00[AMR][1000 genomes]
rs73757908	1.00[AMR][1000 genomes]
rs7747708	1.00[EUR][1000 genomes]
rs9443109	1.00[EUR][1000 genomes]
rs9447341	1.00[EUR][1000 genomes]
rs9447342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
2	chr6:75459800-75465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:75460400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:75460600-75461200	Enhancers	Hela-S3	cervix
6	chr6:75460600-75461800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75460600-75461800	Weak transcription	HMEC	breast
8	chr6:75460600-75461800	Weak transcription	NHEK	skin
9	chr6:75460800-75467600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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