Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29193593..29195791-chr22:29251610..29254228,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12330071	0.86[EUR][1000 genomes]
rs17880929	1.00[AFR][1000 genomes]
rs2206061	0.86[EUR][1000 genomes]
rs2228260	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs41281603	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5752820	0.95[AMR][1000 genomes]
rs5762966	1.00[AFR][1000 genomes]
rs5997401	0.86[EUR][1000 genomes]
rs6005870	0.86[EUR][1000 genomes]
rs6005874	0.86[EUR][1000 genomes]
rs6005898	0.86[EUR][1000 genomes]
rs6005899	0.86[EUR][1000 genomes]
rs6005923	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6005926	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306460	1.00[AFR][1000 genomes]
rs9625551	1.00[AFR][1000 genomes]
rs9625565	0.86[EUR][1000 genomes]
rs9625575	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9625580	0.86[EUR][1000 genomes]
rs9625621	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29251400-29253600	Enhancers	HepG2	liver
2	chr22:29252400-29254200	Weak transcription	Liver	Liver
3	chr22:29252400-29261000	Weak transcription	Fetal Intestine Small	intestine
4	chr22:29253000-29254400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr22:29253200-29253600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr22:29253400-29253600	Enhancers	Duodenum Mucosa	Duodenum
7	chr22:29253400-29253600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr22:29253400-29253600	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search: