Variant report

Variant	rs9306460
Chromosome Location	chr22:29156170-29156171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29156021..29156832-chr6:26157915..26158484,2	MCF-7	breast:
2	chr22:29090716..29093047-chr22:29154418..29156765,2	K562	blood:
3	chr22:29154766..29156419-chr22:29187780..29189689,2	MCF-7	breast:
4	chr22:29155529..29158980-chr22:29193770..29197123,3	MCF-7	breast:
5	chr22:29156118..29157971-chr22:29167441..29169542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158373	Chromatin interaction
ENSG00000100219	Chromatin interaction
ENSG00000159873	Chromatin interaction
ENSG00000226471	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10427858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12330071	0.93[EUR][1000 genomes]
rs17880929	1.00[AFR][1000 genomes]
rs2206061	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2228260	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28448648	0.84[EUR][1000 genomes]
rs41281603	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56119508	1.00[EUR][1000 genomes]
rs5997401	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6005856	0.84[AMR][1000 genomes]
rs6005861	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6005870	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6005874	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6005898	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6005899	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6005924	1.00[AFR][1000 genomes]
rs9625551	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9625558	0.84[EUR][1000 genomes]
rs9625565	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9625575	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9625580	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv9895	chr22:29029961-29184277	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv516312	chr22:29153759-29160314	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29139400-29156400	Weak transcription	Stomach Mucosa	stomach
2	chr22:29141200-29156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:29143400-29156600	Weak transcription	Brain Substantia Nigra	brain
4	chr22:29143600-29160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr22:29143800-29156400	Weak transcription	Brain Angular Gyrus	brain
6	chr22:29144400-29156200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr22:29144400-29156200	Weak transcription	Brain Hippocampus Middle	brain
8	chr22:29144400-29156200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr22:29145400-29157200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr22:29145800-29156200	Weak transcription	Spleen	Spleen
11	chr22:29145800-29156600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr22:29145800-29168000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr22:29146000-29156400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr22:29146000-29156600	Weak transcription	Adipose Nuclei	Adipose
15	chr22:29146600-29156200	Weak transcription	Primary B cells from cord blood	blood
16	chr22:29146800-29156600	Weak transcription	Primary T cells from cord blood	blood
17	chr22:29146800-29156600	Weak transcription	Fetal Intestine Large	intestine
18	chr22:29147400-29156200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr22:29147800-29156400	Weak transcription	Lung	lung
20	chr22:29148000-29164400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr22:29148000-29167000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr22:29148200-29156200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr22:29148200-29156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr22:29148200-29156400	Weak transcription	Placenta	Placenta
25	chr22:29148600-29156200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr22:29149200-29156800	Weak transcription	Fetal Lung	lung
27	chr22:29149400-29156400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr22:29149400-29156800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr22:29149600-29165400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:29149800-29156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr22:29150200-29157400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr22:29150600-29157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr22:29153800-29156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr22:29154200-29156200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr22:29154200-29156600	Weak transcription	Fetal Muscle Leg	muscle
36	chr22:29154400-29156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:29154400-29167400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr22:29155400-29156400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr22:29155400-29156400	Enhancers	HSMM	muscle
40	chr22:29155400-29156800	Enhancers	HepG2	liver
41	chr22:29155600-29156200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr22:29155600-29156400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr22:29155600-29156600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr22:29155600-29156600	Enhancers	HSMMtube	muscle
45	chr22:29155600-29156800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr22:29155600-29157000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr22:29155600-29157600	Enhancers	Primary B cells from peripheral blood	blood
48	chr22:29155800-29156200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr22:29155800-29156200	Enhancers	Fetal Brain Female	brain
50	chr22:29155800-29156400	Enhancers	Brain Anterior Caudate	brain

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