Variant report

Variant	rs60068261
Chromosome Location	chr4:187588318-187588319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2015953	1.00[EUR][1000 genomes]
rs55663302	1.00[EUR][1000 genomes]
rs56309540	1.00[EUR][1000 genomes]
rs57875275	1.00[EUR][1000 genomes]
rs59997667	1.00[EUR][1000 genomes]
rs60796512	1.00[EUR][1000 genomes]
rs73873681	1.00[EUR][1000 genomes]
rs73873696	1.00[EUR][1000 genomes]
rs73873697	1.00[EUR][1000 genomes]
rs73873698	1.00[EUR][1000 genomes]
rs73873699	1.00[EUR][1000 genomes]
rs73873700	1.00[EUR][1000 genomes]
rs73873701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1015619	chr4:187442453-187595058	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1023800	chr4:187444255-187593799	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv881509	chr4:187574398-187614434	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187573000-187605400	Weak transcription	Gastric	stomach
2	chr4:187573200-187590200	Weak transcription	Left Ventricle	heart
3	chr4:187573200-187590200	Weak transcription	Pancreas	Pancrea
4	chr4:187573200-187596600	Weak transcription	Esophagus	oesophagus
5	chr4:187573400-187590400	Weak transcription	Ovary	ovary
6	chr4:187573400-187590600	Weak transcription	Right Atrium	heart
7	chr4:187574400-187591600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:187575200-187590200	Weak transcription	Fetal Heart	heart
9	chr4:187575400-187590400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:187575800-187590200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:187576200-187590400	Weak transcription	Placenta	Placenta
12	chr4:187579400-187589600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:187579400-187590200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:187579600-187590600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:187579600-187590600	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:187579600-187595400	Weak transcription	Brain Substantia Nigra	brain
17	chr4:187580400-187590200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:187580400-187590400	Weak transcription	Lung	lung
19	chr4:187580400-187590600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:187582800-187590600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:187583000-187589000	Weak transcription	Small Intestine	intestine
22	chr4:187583000-187590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:187583000-187590200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:187583000-187590200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:187583000-187590400	Weak transcription	Aorta	Aorta
26	chr4:187583000-187590400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:187583000-187590400	Weak transcription	Right Ventricle	heart
28	chr4:187583000-187614400	Weak transcription	Colonic Mucosa	Colon
29	chr4:187583200-187588400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:187583200-187589000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:187583200-187590600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:187583200-187591000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:187583400-187588800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:187583400-187591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:187583600-187589000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:187583800-187590400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:187584200-187589200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:187584800-187588400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:187584800-187589000	Weak transcription	Fetal Stomach	stomach
40	chr4:187584800-187589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:187584800-187590400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:187585000-187588800	Weak transcription	NH-A	brain
43	chr4:187585000-187589000	Weak transcription	Osteobl	bone
44	chr4:187585000-187589200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:187585000-187589400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:187585000-187589800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr4:187585000-187589800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr4:187585000-187590200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr4:187585400-187590200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr4:187585600-187588800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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