Variant report

Variant	rs73873701
Chromosome Location	chr4:187619780-187619781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:187618926..187621391-chr4:187624842..187626723,2	K562	blood:
2	chr4:187619254..187623290-chr4:187636723..187640845,3	MCF-7	breast:
3	chr4:187613163..187617339-chr4:187617909..187621339,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2015953	1.00[EUR][1000 genomes]
rs55663302	1.00[EUR][1000 genomes]
rs56309540	1.00[EUR][1000 genomes]
rs57875275	1.00[EUR][1000 genomes]
rs59997667	1.00[EUR][1000 genomes]
rs60068261	1.00[EUR][1000 genomes]
rs60796512	1.00[EUR][1000 genomes]
rs73873681	1.00[EUR][1000 genomes]
rs73873696	1.00[EUR][1000 genomes]
rs73873697	1.00[EUR][1000 genomes]
rs73873698	1.00[EUR][1000 genomes]
rs73873699	1.00[EUR][1000 genomes]
rs73873700	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187604600-187626800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:187608000-187632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:187608200-187622200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:187610200-187621200	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:187610800-187620600	Weak transcription	Fetal Kidney	kidney
6	chr4:187611600-187620600	Weak transcription	Fetal Lung	lung
7	chr4:187612000-187620800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:187614000-187620000	Enhancers	Left Ventricle	heart
9	chr4:187614800-187620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:187614800-187621200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:187614800-187621200	Weak transcription	Colonic Mucosa	Colon
12	chr4:187614800-187621200	Weak transcription	Ovary	ovary
13	chr4:187614800-187621200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:187614800-187629400	Weak transcription	Esophagus	oesophagus
15	chr4:187615000-187619800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:187615000-187620400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:187615000-187621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:187615000-187621400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:187615000-187622000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:187615000-187623400	Weak transcription	Hela-S3	cervix
21	chr4:187615200-187621800	Weak transcription	Adipose Nuclei	Adipose
22	chr4:187615400-187621200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:187615400-187628000	Weak transcription	K562	blood
24	chr4:187615600-187620400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:187615600-187620800	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:187615600-187621200	Weak transcription	NHDF-Ad	bronchial
27	chr4:187615600-187621800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:187616200-187620000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:187616400-187620600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:187616600-187620600	Weak transcription	Aorta	Aorta
31	chr4:187616800-187621200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:187617000-187621200	Weak transcription	Brain Germinal Matrix	brain
33	chr4:187617200-187620000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:187617400-187620200	Strong transcription	HSMMtube	muscle
35	chr4:187617400-187620400	Strong transcription	HMEC	breast
36	chr4:187617400-187620800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:187617600-187620600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:187617600-187620600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:187617600-187620600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:187617800-187619800	Strong transcription	NH-A	brain
41	chr4:187617800-187620000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:187617800-187620000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:187617800-187620600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:187617800-187620600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:187617800-187620600	Strong transcription	NHEK	skin
46	chr4:187617800-187621200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:187618200-187620400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:187618200-187621000	Strong transcription	HSMM	muscle
49	chr4:187618200-187621200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:187618200-187621200	Strong transcription	Osteobl	bone

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