Variant report

Variant	rs60068576
Chromosome Location	chr2:55361017-55361018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55354045..55357806-chr2:55359264..55361491,4	K562	blood:
2	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:
3	chr2:55269242..55271326-chr2:55360631..55363213,2	K562	blood:
4	chr2:55275855..55279437-chr2:55359990..55364186,7	K562	blood:
5	chr2:55359631..55362469-chr2:55389581..55391287,2	MCF-7	breast:
6	chr2:55350017..55352674-chr2:55360663..55363208,2	K562	blood:
7	chr2:55354045..55358992-chr2:55359264..55362961,10	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55664473	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55700934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55911307	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56039015	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56181361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57385616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59078210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59657596	0.85[AFR][1000 genomes]
rs72914557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55360200-55361400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:55360400-55361400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:55360400-55361600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
4	chr2:55360400-55361600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr2:55360400-55361600	Flanking Active TSS	K562	blood
6	chr2:55360400-55361800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr2:55360400-55361800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:55360400-55361800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:55360400-55361800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr2:55360400-55362000	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr2:55360400-55362200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:55360600-55361200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr2:55360600-55361200	Active TSS	Brain Angular Gyrus	brain
14	chr2:55360600-55361200	Active TSS	Duodenum Mucosa	Duodenum
15	chr2:55360600-55361200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr2:55360600-55361200	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr2:55360600-55361200	Enhancers	Psoas Muscle	Psoas
18	chr2:55360600-55361200	Flanking Active TSS	Dnd41	blood
19	chr2:55360600-55361200	Active TSS	HMEC	breast
20	chr2:55360600-55361400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr2:55360600-55361400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:55360600-55361400	Active TSS	Liver	Liver
23	chr2:55360600-55361400	Active TSS	Colonic Mucosa	Colon
24	chr2:55360600-55361400	Flanking Active TSS	Fetal Intestine Large	intestine
25	chr2:55360600-55361400	Active TSS	Right Atrium	heart
26	chr2:55360600-55361400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr2:55360600-55361400	Flanking Active TSS	NH-A	brain
28	chr2:55360600-55361600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:55360600-55361600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr2:55360600-55361600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:55360600-55361600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr2:55360600-55361600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr2:55360600-55361600	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr2:55360600-55361600	Enhancers	Esophagus	oesophagus
35	chr2:55360600-55361600	Flanking Active TSS	Fetal Kidney	kidney
36	chr2:55360600-55361600	Flanking Active TSS	GM12878-XiMat	blood
37	chr2:55360600-55361600	Flanking Active TSS	Osteobl	bone
38	chr2:55360600-55361800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:55360600-55361800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr2:55360600-55361800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:55360600-55361800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:55360600-55361800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:55360600-55361800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr2:55360600-55361800	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr2:55360600-55361800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr2:55360600-55361800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr2:55360600-55361800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:55360600-55361800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr2:55360600-55361800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr2:55360600-55361800	Flanking Active TSS	Brain Anterior Caudate	brain

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