Variant report

Variant	rs60070205
Chromosome Location	chr6:114465788-114465789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57019127	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58249373	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58715608	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60132574	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415761	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415762	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415763	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415767	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415808	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415810	1.00[ASN][1000 genomes]
rs62415834	1.00[ASN][1000 genomes]
rs73536687	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536692	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540383	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540394	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742975	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752320	0.88[EUR][1000 genomes]
rs7761798	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762243	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773081	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114444000-114466000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:114447400-114466000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:114454400-114466000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:114455400-114466800	Weak transcription	Pancreas	Pancrea
6	chr6:114456400-114466200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:114457000-114466800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:114462000-114465800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:114462000-114466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:114462000-114466000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:114462000-114466200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:114462000-114466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:114462400-114465800	Weak transcription	HSMMtube	muscle
14	chr6:114462800-114471400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:114463000-114465800	Weak transcription	Fetal Heart	heart
16	chr6:114465200-114466800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:114465200-114467200	Flanking Active TSS	HepG2	liver
18	chr6:114465200-114467200	Enhancers	HSMM	muscle
19	chr6:114465400-114466200	Enhancers	Hela-S3	cervix
20	chr6:114465400-114467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:114465600-114466000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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