Variant report

Variant	rs62415767
Chromosome Location	chr6:114479209-114479210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57019127	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58249373	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58715608	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60070205	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60132574	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415769	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415770	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415771	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415773	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415774	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415808	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415810	1.00[ASN][1000 genomes]
rs62415834	1.00[ASN][1000 genomes]
rs73536687	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536692	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540383	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540394	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742975	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752320	0.88[EUR][1000 genomes]
rs7761798	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762243	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773081	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1029370	chr6:114471446-114566884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114468800-114479800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:114472000-114479800	Weak transcription	Brain Angular Gyrus	brain
3	chr6:114472800-114480000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:114476200-114489400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:114476200-114493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:114476200-114497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:114476400-114488200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:114476400-114488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:114476800-114489400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:114477000-114491800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:114478400-114481000	Enhancers	Fetal Intestine Small	intestine
12	chr6:114478400-114488200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:114478600-114480400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:114479000-114479400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:114479000-114479400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:114479000-114479600	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:114479000-114480600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr6:114479200-114479400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:114479200-114479400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:114479200-114479400	Enhancers	Pancreas	Pancrea
21	chr6:114479200-114481200	Weak transcription	Stomach Mucosa	stomach
22	chr6:114479200-114482600	Enhancers	HepG2	liver

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