Variant report

Variant	rs60076398
Chromosome Location	chr6:120211505-120211506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4307207	1.00[AFR][1000 genomes]
rs57600763	0.93[AFR][1000 genomes]
rs57941112	1.00[EUR][1000 genomes]
rs59089262	1.00[EUR][1000 genomes]
rs59307242	1.00[EUR][1000 genomes]
rs59898462	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60098277	1.00[EUR][1000 genomes]
rs6910605	1.00[EUR][1000 genomes]
rs6915619	1.00[EUR][1000 genomes]
rs6916892	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7756749	1.00[EUR][1000 genomes]
rs9489789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2830171	chr6:120200969-120233977	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120205800-120211600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:120211200-120211800	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:120211200-120212600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:120211400-120211800	Enhancers	Fetal Heart	heart
5	chr6:120211400-120212200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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