Variant report

Variant	rs6916892
Chromosome Location	chr6:120151267-120151268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4307207	0.82[AFR][1000 genomes]
rs57600763	0.87[AMR][1000 genomes]
rs57941112	1.00[EUR][1000 genomes]
rs59089262	1.00[EUR][1000 genomes]
rs59307242	1.00[EUR][1000 genomes]
rs59898462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60076398	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60098277	1.00[EUR][1000 genomes]
rs6910605	1.00[EUR][1000 genomes]
rs6915619	1.00[EUR][1000 genomes]
rs7756749	1.00[EUR][1000 genomes]
rs9489789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120150000-120153800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:120150000-120154200	Enhancers	NHEK	skin
3	chr6:120150200-120153400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:120150400-120152800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:120150400-120153000	Enhancers	HMEC	breast
6	chr6:120150600-120152800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:120150800-120151400	Enhancers	Fetal Thymus	thymus
8	chr6:120150800-120152400	Enhancers	Placenta	Placenta
9	chr6:120150800-120152800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:120151200-120152800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:120151200-120153000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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