Variant report

Variant	rs60079297
Chromosome Location	chr6:143233822-143233823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143228299..143231052-chr6:143232698..143234993,4	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6924686	0.97[AFR][1000 genomes]
rs7772306	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143206600-143239400	Weak transcription	Gastric	stomach
2	chr6:143221600-143241400	Weak transcription	Lung	lung
3	chr6:143221600-143247600	Weak transcription	Ovary	ovary
4	chr6:143222000-143247600	Weak transcription	Aorta	Aorta
5	chr6:143222200-143236400	Weak transcription	Right Atrium	heart
6	chr6:143222400-143247600	Weak transcription	Fetal Stomach	stomach
7	chr6:143224200-143247400	Weak transcription	Adipose Nuclei	Adipose
8	chr6:143224200-143247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143224200-143247600	Weak transcription	Pancreas	Pancrea
10	chr6:143224600-143234000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:143224600-143245800	Weak transcription	HepG2	liver
12	chr6:143225000-143247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:143225200-143247200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:143225600-143239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:143225800-143234000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:143225800-143239400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:143226000-143239600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:143226000-143247000	Weak transcription	NHLF	lung
19	chr6:143226200-143234600	Weak transcription	Dnd41	blood
20	chr6:143226200-143236400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:143226200-143239600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:143226200-143239600	Weak transcription	Osteobl	bone
23	chr6:143226400-143236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:143226400-143239400	Weak transcription	NHEK	skin
25	chr6:143226600-143247000	Weak transcription	HMEC	breast
26	chr6:143228800-143234200	Enhancers	Primary T cells from cord blood	blood
27	chr6:143228800-143239000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:143229000-143234000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:143229000-143234000	Weak transcription	Psoas Muscle	Psoas
30	chr6:143229000-143234200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:143229000-143247000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:143229000-143247600	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:143229200-143234000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:143229200-143234000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:143229200-143234000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr6:143229200-143239000	Weak transcription	HSMM	muscle
37	chr6:143229200-143239000	Weak transcription	HSMMtube	muscle
38	chr6:143229400-143247000	Weak transcription	NHDF-Ad	bronchial
39	chr6:143229400-143247600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:143229600-143234000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:143229800-143234000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:143230200-143247400	Weak transcription	Fetal Intestine Small	intestine
43	chr6:143230800-143234000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:143231200-143247600	Weak transcription	Small Intestine	intestine
45	chr6:143231600-143234200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:143231600-143235000	Weak transcription	Thymus	Thymus
47	chr6:143232000-143234200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:143232600-143235200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:143232800-143234600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:143233000-143236200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links