Variant report

Variant	rs7772306
Chromosome Location	chr6:143248015-143248016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143246172..143248128-chr6:143249871..143252220,3	K562	blood:
2	chr6:143234070..143236358-chr6:143246003..143249254,3	K562	blood:
3	chr6:143247603..143250539-chr6:143261242..143263408,2	K562	blood:
4	chr6:143246540..143249583-chr6:143265302..143269473,5	MCF-7	breast:
5	chr6:143243279..143245057-chr6:143245659..143248452,2	MCF-7	breast:
6	chr6:143242994..143244603-chr6:143247044..143248949,2	K562	blood:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60079297	0.82[AFR][1000 genomes]
rs6924686	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143247000-143249600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr6:143247200-143249800	Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr6:143247400-143248200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143247400-143248200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:143247400-143248400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:143247400-143248600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:143247400-143248600	Active TSS	Primary B cells from cord blood	blood
8	chr6:143247400-143248600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:143247400-143248600	Active TSS	Brain Cingulate Gyrus	brain
10	chr6:143247400-143248600	Active TSS	Colonic Mucosa	Colon
11	chr6:143247400-143248600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr6:143247400-143248600	Active TSS	Fetal Kidney	kidney
13	chr6:143247400-143248800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:143247400-143248800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:143247400-143248800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:143247400-143248800	Active TSS	Liver	Liver
17	chr6:143247400-143248800	Active TSS	Colon Smooth Muscle	Colon
18	chr6:143247400-143248800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr6:143247400-143249000	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:143247400-143249000	Active TSS	Stomach Smooth Muscle	stomach
21	chr6:143247400-143249200	Active TSS	Right Atrium	heart
22	chr6:143247400-143249400	Active TSS	HSMMtube	muscle
23	chr6:143247400-143249800	Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr6:143247400-143249800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr6:143247400-143249800	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr6:143247600-143248200	Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr6:143247600-143248200	Enhancers	Fetal Brain Male	brain
28	chr6:143247600-143248200	Weak transcription	Fetal Heart	heart
29	chr6:143247600-143248400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:143247600-143248400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:143247600-143248400	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:143247600-143248400	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr6:143247600-143248400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:143247600-143248400	Active TSS	Gastric	stomach
35	chr6:143247600-143248600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr6:143247600-143248600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:143247600-143248600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:143247600-143248600	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:143247600-143248600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:143247600-143248600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:143247600-143248600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:143247600-143248600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:143247600-143248600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:143247600-143248600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:143247600-143248600	Active TSS	Aorta	Aorta
46	chr6:143247600-143248600	Active TSS	Brain Anterior Caudate	brain
47	chr6:143247600-143248600	Active TSS	Brain Hippocampus Middle	brain
48	chr6:143247600-143248600	Active TSS	Brain Substantia Nigra	brain
49	chr6:143247600-143248600	Active TSS	Esophagus	oesophagus
50	chr6:143247600-143248600	Active TSS	Fetal Lung	lung

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