Variant report

Variant	rs60079971
Chromosome Location	chr10:26841589-26841590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58547648	1.00[AMR][1000 genomes]
rs58918550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59347046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59353776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60264466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60964614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72481172	1.00[AMR][1000 genomes]
rs9664046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
2	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
5	chr10:26830000-26845000	Strong transcription	Primary hematopoietic stem cells	blood
6	chr10:26831000-26844600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:26834800-26858400	Strong transcription	Dnd41	blood
8	chr10:26836000-26844400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:26837800-26841800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:26837800-26844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:26838400-26844000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:26839200-26843600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:26839200-26847000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:26839400-26844200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:26839400-26844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26839400-26844800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood
18	chr10:26839600-26841600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:26839600-26844600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr10:26839800-26843000	Strong transcription	Liver	Liver
22	chr10:26839800-26844000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:26839800-26845000	Strong transcription	Primary B cells from cord blood	blood
24	chr10:26839800-26845000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:26840000-26841800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:26840000-26843600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr10:26840000-26844400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:26840000-26850600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:26840200-26841800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:26840200-26842800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:26840200-26843400	Strong transcription	Adipose Nuclei	Adipose
34	chr10:26840200-26855200	Weak transcription	Placenta	Placenta
35	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:26840400-26843200	Strong transcription	Spleen	Spleen
37	chr10:26840400-26844600	Weak transcription	Esophagus	oesophagus
38	chr10:26840400-26849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:26840600-26842800	Weak transcription	Lung	lung
40	chr10:26840600-26844600	Strong transcription	Thymus	Thymus
41	chr10:26840600-26845600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:26841000-26844200	Strong transcription	GM12878-XiMat	blood
43	chr10:26841200-26841800	Genic enhancers	Monocytes-CD14+_RO01746	blood
44	chr10:26841200-26842400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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