Variant report

Variant	rs60964614
Chromosome Location	chr10:26820206-26820207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58918550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59347046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59353776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60079971	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60264466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780200-26834000	Strong transcription	Dnd41	blood
2	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
6	chr10:26802200-26822800	Weak transcription	Spleen	Spleen
7	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:26802400-26824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:26809200-26826600	Strong transcription	Liver	Liver
11	chr10:26809200-26831800	Weak transcription	Lung	lung
12	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
13	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:26809400-26827200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:26809400-26828200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26811400-26820800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:26813600-26827000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:26814200-26824000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:26814400-26821400	Strong transcription	Adipose Nuclei	Adipose
21	chr10:26814400-26832600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr10:26814800-26826800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:26815000-26823400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:26815200-26820800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:26815600-26832800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:26816200-26826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:26817400-26821600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:26817600-26820800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:26817800-26828800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:26818400-26824400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:26818600-26820800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:26818600-26832800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:26819000-26820600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:26819000-26820600	Weak transcription	Thymus	Thymus
36	chr10:26819000-26820800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:26819200-26820600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:26819200-26820600	Weak transcription	Primary T cells from cord blood	blood
39	chr10:26819200-26820600	Weak transcription	GM12878-XiMat	blood
40	chr10:26819200-26820800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr10:26819600-26837000	Weak transcription	Right Atrium	heart

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