Variant report

Variant	rs60085278
Chromosome Location	chr1:10163696-10163697
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12045943	1.00[EUR][1000 genomes]
rs12076922	0.95[ASN][1000 genomes]
rs17034545	1.00[EUR][1000 genomes]
rs17034558	1.00[EUR][1000 genomes]
rs4415569	1.00[EUR][1000 genomes]
rs60208411	0.87[ASN][1000 genomes]
rs61782922	1.00[EUR][1000 genomes]
rs61782923	1.00[EUR][1000 genomes]
rs61782925	1.00[EUR][1000 genomes]
rs61782936	1.00[EUR][1000 genomes]
rs6687550	1.00[EUR][1000 genomes]
rs6688779	1.00[EUR][1000 genomes]
rs6691957	1.00[EUR][1000 genomes]
rs6700518	1.00[EUR][1000 genomes]
rs74051807	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522629	chr1:10125765-10239197	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10107400-10165400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:10125800-10165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:10125800-10165400	Weak transcription	Fetal Brain Male	brain
4	chr1:10126400-10165400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:10132600-10165400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:10134600-10166200	Weak transcription	Colonic Mucosa	Colon
7	chr1:10134600-10166600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:10135200-10164200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:10135200-10165400	Weak transcription	HUVEC	blood vessel
10	chr1:10135800-10164200	Weak transcription	NH-A	brain
11	chr1:10135800-10164200	Weak transcription	NHLF	lung
12	chr1:10136200-10164000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:10137600-10165600	Weak transcription	Esophagus	oesophagus
14	chr1:10141000-10164200	Weak transcription	Fetal Brain Female	brain
15	chr1:10144000-10165400	Weak transcription	HSMMtube	muscle
16	chr1:10144400-10164000	Weak transcription	Right Ventricle	heart
17	chr1:10145400-10164200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:10145400-10189600	Weak transcription	Psoas Muscle	Psoas
19	chr1:10145600-10164000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:10145600-10164400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:10145600-10165400	Weak transcription	Brain Angular Gyrus	brain
22	chr1:10145600-10165400	Weak transcription	Fetal Heart	heart
23	chr1:10145800-10165400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:10145800-10197000	Weak transcription	Stomach Mucosa	stomach
25	chr1:10153600-10164200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:10153800-10172200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:10154800-10172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:10154800-10183000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:10155000-10171400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr1:10155200-10166400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:10156400-10164200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:10156400-10165400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:10156800-10165400	Weak transcription	Spleen	Spleen
34	chr1:10157200-10165600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr1:10157800-10165400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:10158400-10178000	Strong transcription	Primary T cells from cord blood	blood
37	chr1:10158600-10174000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:10160200-10164000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:10160200-10175800	Strong transcription	Fetal Stomach	stomach
40	chr1:10160400-10167600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:10160400-10167800	Strong transcription	Fetal Muscle Leg	muscle
42	chr1:10160400-10168000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:10160400-10169600	Strong transcription	Dnd41	blood
44	chr1:10160400-10171400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:10160600-10167000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr1:10160600-10171800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:10160800-10165600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:10160800-10167200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr1:10160800-10168600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:10161000-10165400	Strong transcription	Adipose Nuclei	Adipose

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