Variant report

Variant	rs61782922
Chromosome Location	chr1:10201004-10201005
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10200210..10202495-chr1:10202617..10204188,2	K562	blood:
2	chr1:10194866..10197025-chr1:10199036..10201040,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11121521	1.00[ASN][1000 genomes]
rs12045943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070814	1.00[ASN][1000 genomes]
rs17034545	1.00[EUR][1000 genomes]
rs17034558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4415569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60085278	1.00[EUR][1000 genomes]
rs61782920	1.00[ASN][1000 genomes]
rs61782923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61782933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61782936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673887	1.00[ASN][1000 genomes]
rs6685910	1.00[ASN][1000 genomes]
rs6687550	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7538883	1.00[ASN][1000 genomes]
rs7541780	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522629	chr1:10125765-10239197	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10163400-10219000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:10164000-10227400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:10167600-10207400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:10175000-10207200	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:10180000-10211200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:10182200-10231200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:10182400-10229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:10182800-10211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:10182800-10221000	Weak transcription	Fetal Brain Male	brain
10	chr1:10182800-10231400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:10184000-10235000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:10185000-10201800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:10185200-10201200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:10185400-10204400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:10185400-10207400	Strong transcription	Adipose Nuclei	Adipose
16	chr1:10185800-10211400	Weak transcription	A549	lung
17	chr1:10186000-10205800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr1:10186200-10207800	Strong transcription	Fetal Intestine Large	intestine
19	chr1:10186400-10207400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:10186600-10204200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:10186600-10207200	Strong transcription	Liver	Liver
22	chr1:10186600-10207800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:10186600-10207800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:10186800-10201800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:10186800-10202000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:10187000-10201600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:10187600-10202000	Strong transcription	Placenta	Placenta
28	chr1:10188400-10208200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr1:10188400-10208600	Strong transcription	Fetal Stomach	stomach
30	chr1:10188600-10201600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:10188600-10204200	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:10189400-10201200	Strong transcription	Fetal Lung	lung
33	chr1:10191200-10225000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:10191200-10239600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:10191800-10203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr1:10191800-10209200	Weak transcription	Fetal Heart	heart
37	chr1:10191800-10215600	Weak transcription	Psoas Muscle	Psoas
38	chr1:10193200-10201600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:10193200-10203600	Weak transcription	HSMM	muscle
40	chr1:10193200-10203800	Weak transcription	NHLF	lung
41	chr1:10193200-10206600	Weak transcription	Pancreas	Pancrea
42	chr1:10193200-10231200	Weak transcription	Small Intestine	intestine
43	chr1:10193400-10211200	Weak transcription	Fetal Kidney	kidney
44	chr1:10193800-10203600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:10194200-10232200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:10194600-10202400	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:10194800-10201400	Strong transcription	Dnd41	blood
48	chr1:10195000-10201600	Strong transcription	Aorta	Aorta
49	chr1:10195400-10203400	Weak transcription	HSMMtube	muscle
50	chr1:10195400-10219400	Weak transcription	Colonic Mucosa	Colon

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