The 2.0 version of rSNPBase

Variant report

Variant rs60109498
Chromosome Location chr12:8861714-8861715
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:8851400-8862000 Weak transcription Gastric stomach
2 chr12:8851600-8862000 Weak transcription Lung lung
3 chr12:8851800-8862000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr12:8851800-8862000 Weak transcription Left Ventricle heart
5 chr12:8851800-8862000 Weak transcription HSMM muscle
6 chr12:8851800-8862000 Weak transcription HSMMtube muscle
7 chr12:8851800-8863400 Weak transcription Right Ventricle heart
8 chr12:8851800-8873200 Weak transcription Fetal Muscle Trunk muscle
9 chr12:8851800-8877200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr12:8852000-8861800 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr12:8852600-8862000 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr12:8852600-8874600 Weak transcription H9 Cell Line embryonic stem cell
13 chr12:8852600-8880000 Weak transcription HMEC breast
14 chr12:8852800-8863800 Weak transcription H1 Cell Line embryonic stem cell
15 chr12:8852800-8864200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr12:8852800-8871400 Weak transcription Fetal Intestine Large intestine
17 chr12:8852800-8877200 Weak transcription Brain Cingulate Gyrus brain
18 chr12:8852800-8908600 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr12:8853000-8862000 Weak transcription Primary T cells from cord blood blood
20 chr12:8853000-8871800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr12:8853000-8873200 Weak transcription A549 lung
22 chr12:8853000-8875600 Weak transcription Brain Inferior Temporal Lobe brain
23 chr12:8853200-8862000 Weak transcription Fetal Thymus thymus
24 chr12:8853200-8862000 Weak transcription Psoas Muscle Psoas
25 chr12:8853200-8868400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr12:8853200-8872400 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr12:8853200-8934000 Weak transcription K562 blood
28 chr12:8853400-8866400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr12:8853400-8866400 Weak transcription NHEK skin
30 chr12:8853600-8862000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr12:8853600-8862000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr12:8853600-8862000 Weak transcription Right Atrium heart
33 chr12:8853800-8862000 Weak transcription Rectal Smooth Muscle rectum
34 chr12:8854000-8866200 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr12:8854200-8862400 Weak transcription Brain Germinal Matrix brain
36 chr12:8854600-8862000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr12:8855000-8870200 Weak transcription Fetal Brain Male brain
38 chr12:8855200-8861800 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr12:8855200-8862000 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr12:8855200-8868000 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr12:8855400-8861800 Weak transcription Fetal Lung lung
42 chr12:8855600-8867800 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr12:8855600-8875200 Weak transcription Fetal Kidney kidney
44 chr12:8856400-8861800 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr12:8856400-8861800 Weak transcription Ovary ovary
46 chr12:8856400-8866200 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr12:8858800-8862600 Strong transcription Hela-S3 cervix
48 chr12:8859600-8862200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr12:8859800-8862000 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr12:8859800-8863800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015