Variant report

Variant	rs60109716
Chromosome Location	chr2:55290004-55290005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56153341	0.96[AFR][1000 genomes]
rs56244204	0.90[AFR][1000 genomes]
rs57068800	0.93[AFR][1000 genomes]
rs58954291	1.00[AFR][1000 genomes]
rs61344395	0.81[AFR][1000 genomes]
rs72910860	0.86[AFR][1000 genomes]
rs72910870	1.00[AFR][1000 genomes]
rs72912565	0.96[AFR][1000 genomes]
rs72912586	1.00[AFR][1000 genomes]
rs72912589	0.93[AFR][1000 genomes]
rs72912597	1.00[AFR][1000 genomes]
rs72914504	1.00[AFR][1000 genomes]
rs72914511	0.93[AFR][1000 genomes]
rs72914518	0.81[AFR][1000 genomes]
rs7583051	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:55287800-55292200	Weak transcription	Fetal Heart	heart
4	chr2:55288000-55290400	Weak transcription	K562	blood
5	chr2:55289600-55294200	Weak transcription	Lung	lung
6	chr2:55290000-55290600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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