Variant report

Variant	rs72914504
Chromosome Location	chr2:55303247-55303248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56153341	0.96[AFR][1000 genomes]
rs56244204	0.90[AFR][1000 genomes]
rs57068800	0.93[AFR][1000 genomes]
rs58954291	1.00[AFR][1000 genomes]
rs60109716	1.00[AFR][1000 genomes]
rs61344395	0.81[AFR][1000 genomes]
rs72910860	0.86[AFR][1000 genomes]
rs72910870	1.00[AFR][1000 genomes]
rs72912565	0.96[AFR][1000 genomes]
rs72912586	1.00[AFR][1000 genomes]
rs72912589	0.93[AFR][1000 genomes]
rs72912597	1.00[AFR][1000 genomes]
rs72914511	0.93[AFR][1000 genomes]
rs72914518	0.81[AFR][1000 genomes]
rs7583051	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55303000-55304200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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