The 2.0 version of rSNPBase

Variant report

Variant rs60116790
Chromosome Location chr22:29204738-29204739
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:29197000-29205400 Weak transcription Spleen Spleen
2 chr22:29197200-29208200 Weak transcription Esophagus oesophagus
3 chr22:29197200-29209800 Weak transcription Left Ventricle heart
4 chr22:29197200-29214200 Weak transcription H9 Cell Line embryonic stem cell
5 chr22:29197200-29231600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr22:29197400-29214400 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr22:29197400-29220400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr22:29197600-29209800 Weak transcription Ovary ovary
9 chr22:29197800-29214200 Weak transcription Right Ventricle heart
10 chr22:29198000-29225200 Weak transcription HSMM muscle
11 chr22:29198200-29218600 Weak transcription Brain Angular Gyrus brain
12 chr22:29198400-29206200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr22:29198400-29208200 Weak transcription Fetal Lung lung
14 chr22:29198400-29208400 Weak transcription Lung lung
15 chr22:29198400-29209800 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr22:29198400-29214000 Weak transcription Colonic Mucosa Colon
17 chr22:29198400-29214400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr22:29198400-29215600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr22:29198400-29225200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr22:29198600-29206800 Weak transcription Muscle Satellite Cultured Cells --
21 chr22:29198600-29207200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr22:29198600-29207200 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr22:29198600-29210600 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr22:29198600-29211200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr22:29198600-29212600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr22:29198600-29214200 Weak transcription Colon Smooth Muscle Colon
27 chr22:29198600-29214400 Weak transcription Aorta Aorta
28 chr22:29198600-29214600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr22:29198600-29219400 Weak transcription NHLF lung
30 chr22:29198600-29225200 Weak transcription Brain Cingulate Gyrus brain
31 chr22:29198600-29225200 Weak transcription Osteobl bone
32 chr22:29198600-29231400 Weak transcription HSMMtube muscle
33 chr22:29198800-29204800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr22:29198800-29204800 Weak transcription A549 lung
35 chr22:29198800-29205600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr22:29198800-29205800 Weak transcription Primary B cells from cord blood blood
37 chr22:29198800-29206800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr22:29198800-29207200 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr22:29198800-29207800 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr22:29198800-29214200 Weak transcription Stomach Smooth Muscle stomach
41 chr22:29198800-29214400 Weak transcription Fetal Heart heart
42 chr22:29198800-29230800 Weak transcription NHEK skin
43 chr22:29199000-29206200 Weak transcription GM12878-XiMat blood
44 chr22:29199000-29208400 Weak transcription NHDF-Ad bronchial
45 chr22:29199400-29207400 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr22:29200600-29206000 Enhancers Placenta Placenta
47 chr22:29200600-29231400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr22:29200800-29205200 Weak transcription Thymus Thymus
49 chr22:29200800-29208200 Weak transcription Fetal Stomach stomach
50 chr22:29201000-29204800 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015