Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10222265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11913747	1.00[AMR][1000 genomes]
rs12166716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16986649	1.00[AMR][1000 genomes]
rs16987011	1.00[AMR][1000 genomes]
rs17882700	1.00[AMR][1000 genomes]
rs59060951	1.00[ASN][1000 genomes]
rs59974795	1.00[ASN][1000 genomes]
rs60116790	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61339566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7286816	1.00[ASN][1000 genomes]
rs73388803	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73388808	1.00[ASN][1000 genomes]
rs9620826	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9620828	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9620833	1.00[AMR][1000 genomes]
rs9620839	0.84[AFR][1000 genomes]
rs9625548	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625554	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625568	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625572	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625586	1.00[ASN][1000 genomes]
rs9625603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9625630	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29226000-29248800	Weak transcription	Primary T cells from cord blood	blood
2	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
3	chr22:29243200-29249800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr22:29244800-29251400	Weak transcription	Fetal Intestine Small	intestine
5	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
6	chr22:29246000-29252000	Weak transcription	Ovary	ovary
7	chr22:29246200-29251600	Weak transcription	Liver	Liver
8	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea

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