Variant report

Variant	rs9620839
Chromosome Location	chr22:29270213-29270214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10222265	0.84[AFR][1000 genomes]
rs12165475	0.87[YRI][hapmap]
rs12166716	1.00[YRI][hapmap]
rs12167378	0.87[YRI][hapmap]
rs17878936	0.82[YRI][hapmap]
rs2073326	0.82[YRI][hapmap]
rs2206061	1.00[YRI][hapmap]
rs5997401	1.00[YRI][hapmap]
rs6005861	1.00[YRI][hapmap]
rs61339566	0.84[AFR][1000 genomes]
rs8137589	0.82[AFR][1000 genomes]
rs9620826	1.00[YRI][hapmap]
rs9620828	1.00[YRI][hapmap]
rs9625544	0.87[YRI][hapmap]
rs9625554	1.00[YRI][hapmap]
rs9625602	0.84[AFR][1000 genomes]
rs9625603	0.84[AFR][1000 genomes]
rs9625630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625639	0.90[AFR][1000 genomes]
rs9625645	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv3589	chr22:29265164-29288935	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29266200-29278400	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29266400-29270800	Weak transcription	HepG2	liver
3	chr22:29269400-29271400	Enhancers	HSMMtube	muscle
4	chr22:29269600-29271200	Enhancers	Fetal Muscle Leg	muscle
5	chr22:29270200-29270400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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