Variant report

Variant	rs60121038
Chromosome Location	chr3:138198159-138198160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10428128	1.00[EUR][1000 genomes]
rs11921301	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923867	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926199	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1865	1.00[EUR][1000 genomes]
rs57333469	1.00[EUR][1000 genomes]
rs57752939	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57873424	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57952208	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58205884	1.00[EUR][1000 genomes]
rs58725012	1.00[EUR][1000 genomes]
rs58886826	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086521	1.00[EUR][1000 genomes]
rs59316948	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59336525	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60220475	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60331753	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61361298	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6439800	1.00[EUR][1000 genomes]
rs6794254	1.00[EUR][1000 genomes]
rs73864577	1.00[EUR][1000 genomes]
rs73864583	1.00[EUR][1000 genomes]
rs73864584	1.00[EUR][1000 genomes]
rs73864585	1.00[EUR][1000 genomes]
rs7625183	1.00[EUR][1000 genomes]
rs9755326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv3447663	chr3:138096329-138273034	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999041	chr3:138148812-138347988	Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv522517	chr3:138174523-138297982	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138161600-138198400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:138170800-138198400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:138171400-138198400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:138179800-138199400	Weak transcription	Thymus	Thymus
5	chr3:138184400-138198400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:138188000-138210800	Weak transcription	Lung	lung
7	chr3:138188000-138211600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:138189600-138198400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:138190000-138210800	Weak transcription	Psoas Muscle	Psoas
10	chr3:138191800-138198600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:138191800-138203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:138192000-138198400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:138194000-138260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:138194400-138198400	Weak transcription	Fetal Heart	heart
15	chr3:138195800-138199400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:138196200-138205000	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:138196600-138198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:138197200-138198800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:138197200-138205000	Weak transcription	Brain Anterior Caudate	brain
20	chr3:138197600-138198200	Enhancers	HSMMtube	muscle
21	chr3:138197600-138202800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:138197800-138198600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:138197800-138203200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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