Variant report

Variant	rs6439800
Chromosome Location	chr3:138018341-138018342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138016564..138021250-chr3:138021841..138026048,7	K562	blood:
2	chr3:138013359..138015664-chr3:138015823..138019063,3	MCF-7	breast:
3	chr3:138011524..138013520-chr3:138016624..138019234,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10428128	1.00[EUR][1000 genomes]
rs1199332	1.00[TSI][hapmap]
rs167908	0.88[MKK][hapmap];1.00[AMR][1000 genomes]
rs1865	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs57333469	1.00[EUR][1000 genomes]
rs57873424	1.00[EUR][1000 genomes]
rs58205884	1.00[EUR][1000 genomes]
rs58725012	1.00[EUR][1000 genomes]
rs59086521	1.00[EUR][1000 genomes]
rs59336525	1.00[EUR][1000 genomes]
rs60121038	1.00[EUR][1000 genomes]
rs61361298	1.00[EUR][1000 genomes]
rs6794254	1.00[EUR][1000 genomes]
rs73864577	1.00[EUR][1000 genomes]
rs73864583	1.00[EUR][1000 genomes]
rs73864584	1.00[EUR][1000 genomes]
rs73864585	1.00[EUR][1000 genomes]
rs7625183	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9755326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
2	chr3:137977200-138019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:137999600-138018600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:137999600-138018600	Strong transcription	Adipose Nuclei	Adipose
6	chr3:137999600-138018800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:138000400-138018800	Strong transcription	Fetal Muscle Leg	muscle
8	chr3:138000400-138019000	Strong transcription	Stomach Smooth Muscle	stomach
9	chr3:138000800-138018800	Strong transcription	Lung	lung
10	chr3:138001800-138018600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:138001800-138018600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:138001800-138018600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:138002000-138018600	Strong transcription	Thymus	Thymus
14	chr3:138002000-138018800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:138002200-138018400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:138002200-138018600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:138002200-138018600	Strong transcription	Left Ventricle	heart
18	chr3:138002200-138018800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:138002400-138018800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr3:138002600-138018600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr3:138002600-138019200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:138002800-138019000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:138003000-138018800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:138003200-138019000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:138005400-138027000	Weak transcription	Fetal Heart	heart
26	chr3:138007000-138019200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:138007200-138019000	Strong transcription	Fetal Stomach	stomach
28	chr3:138007400-138021800	Weak transcription	K562	blood
29	chr3:138007400-138024600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:138007800-138018800	Strong transcription	Placenta	Placenta
31	chr3:138007800-138019200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:138008200-138019600	Weak transcription	A549	lung
33	chr3:138008600-138019000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:138010000-138018400	Weak transcription	Osteobl	bone
35	chr3:138010400-138019200	Weak transcription	NH-A	brain
36	chr3:138011400-138018600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:138011400-138018800	Strong transcription	Pancreas	Pancrea
38	chr3:138011600-138019200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:138012600-138021800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:138013600-138019000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:138013800-138018600	Strong transcription	Spleen	Spleen
42	chr3:138014200-138019000	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr3:138014400-138020200	Weak transcription	NHLF	lung
44	chr3:138014800-138021000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:138015000-138019200	Weak transcription	Stomach Mucosa	stomach
46	chr3:138015200-138018600	Weak transcription	Brain Angular Gyrus	brain
47	chr3:138015200-138019000	Weak transcription	NHDF-Ad	bronchial
48	chr3:138015600-138018600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:138015600-138020800	Enhancers	Fetal Brain Male	brain
50	chr3:138015800-138018600	Strong transcription	Brain Anterior Caudate	brain

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