Variant report

Variant	rs6014027
Chromosome Location	chr20:53087628-53087629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53076124..53079561-chr20:53086768..53089276,3	MCF-7	breast:
2	chr20:53071006..53073926-chr20:53086546..53089088,2	MCF-7	breast:
3	chr20:53084969..53087855-chr20:53094880..53097639,2	MCF-7	breast:
4	chr20:53085736..53089273-chr20:53091185..53093205,3	MCF-7	breast:
5	chr20:52967821..52970666-chr20:53086296..53089012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101134	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11907464	0.87[EUR][1000 genomes]
rs13040866	0.87[EUR][1000 genomes]
rs13042185	1.00[CEU][hapmap]
rs13042986	1.00[CEU][hapmap]
rs13044898	1.00[CEU][hapmap]
rs1330017	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16999643	0.89[CEU][hapmap]
rs6014019	0.89[CEU][hapmap]
rs6014020	0.89[CEU][hapmap]
rs6014026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6014032	1.00[CEU][hapmap]
rs6023244	0.88[CEU][hapmap]
rs6023245	0.88[CEU][hapmap]
rs6023251	0.88[CEU][hapmap]
rs6023254	0.89[CEU][hapmap]
rs6023262	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023263	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023265	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023266	1.00[ASN][1000 genomes]
rs6023267	1.00[ASN][1000 genomes]
rs6023268	1.00[ASN][1000 genomes]
rs6023269	0.87[EUR][1000 genomes]
rs6023270	0.87[EUR][1000 genomes]
rs6023272	1.00[CEU][hapmap]
rs6023273	1.00[CEU][hapmap]
rs6023274	1.00[CEU][hapmap]
rs6023275	1.00[CEU][hapmap]
rs6023276	1.00[CEU][hapmap]
rs6023291	1.00[CEU][hapmap]
rs6023307	1.00[CEU][hapmap]
rs6023309	1.00[CEU][hapmap]
rs6091886	0.88[CEU][hapmap]
rs6091887	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6091890	0.81[EUR][1000 genomes]
rs6091891	1.00[CEU][hapmap]
rs6098002	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6098003	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6098005	0.86[EUR][1000 genomes]
rs6098006	1.00[CEU][hapmap]
rs6098007	1.00[CEU][hapmap]
rs6098008	1.00[CEU][hapmap]
rs6098009	1.00[CEU][hapmap]
rs6098011	1.00[CEU][hapmap]
rs922398	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53084800-53091800	Weak transcription	Aorta	Aorta
2	chr20:53086800-53088000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr20:53087200-53088000	Enhancers	Fetal Muscle Trunk	muscle

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