Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr20:53087752-53088098	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr20:53087885-53088085	NB4	blood:	n/a	n/a
3	TEAD4	chr20:53087799-53088106	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:53076124..53079561-chr20:53086768..53089276,3	MCF-7	breast:
2	chr20:53071006..53073926-chr20:53086546..53089088,2	MCF-7	breast:
3	chr20:53085736..53089273-chr20:53091185..53093205,3	MCF-7	breast:
4	chr20:52967821..52970666-chr20:53086296..53089012,2	MCF-7	breast:
5	chr17:56736303..56736887-chr20:53087682..53088529,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1330017	1.00[ASN][1000 genomes]
rs2870330	0.85[EUR][1000 genomes]
rs55665963	0.83[EUR][1000 genomes]
rs56302497	0.96[EUR][1000 genomes]
rs57582150	0.85[EUR][1000 genomes]
rs6014026	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6014027	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6023262	1.00[ASN][1000 genomes]
rs6023263	1.00[ASN][1000 genomes]
rs6023265	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6023266	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023267	1.00[ASN][1000 genomes]
rs6023268	1.00[ASN][1000 genomes]
rs6091886	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6097998	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6097999	0.85[EUR][1000 genomes]
rs6098003	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68091706	0.98[EUR][1000 genomes]
rs7271481	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7271579	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53084800-53091800	Weak transcription	Aorta	Aorta
2	chr20:53088000-53091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr20:53088000-53091600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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