Variant report
Variant | rs55665963 |
---|---|
Chromosome Location | chr20:53081875-53081876 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
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rs_ID | r2[population] |
---|---|
rs16999643 | 0.85[EUR][1000 genomes] |
rs55957910 | 0.86[EUR][1000 genomes] |
rs56302497 | 0.87[EUR][1000 genomes] |
rs58143732 | 0.94[EUR][1000 genomes] |
rs6014019 | 0.85[EUR][1000 genomes] |
rs6014020 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6023251 | 0.85[EUR][1000 genomes] |
rs6023253 | 0.85[EUR][1000 genomes] |
rs6023254 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6023258 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6023262 | 0.82[AMR][1000 genomes] |
rs6023266 | 0.85[EUR][1000 genomes] |
rs60780716 | 0.94[EUR][1000 genomes] |
rs6091886 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6091887 | 0.83[EUR][1000 genomes] |
rs6097987 | 0.85[EUR][1000 genomes] |
rs6097988 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6097998 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6097999 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs68091706 | 0.85[EUR][1000 genomes] |
rs7264053 | 0.85[EUR][1000 genomes] |
rs7264143 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7271481 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7271579 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs73141254 | 0.87[EUR][1000 genomes] |
rs73141258 | 0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
2 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
3 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:53075000-53084000 | Weak transcription | Skeletal Muscle Female | skeletal muscle |