Variant report

Variant	rs56302497
Chromosome Location	chr20:53086256-53086257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2870330	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55665963	0.87[EUR][1000 genomes]
rs55957910	0.94[AFR][1000 genomes]
rs57582150	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58143732	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6023266	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60780716	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6091886	0.85[EUR][1000 genomes]
rs6091887	0.96[EUR][1000 genomes]
rs6097998	0.85[EUR][1000 genomes]
rs6097999	0.85[EUR][1000 genomes]
rs68091706	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7271481	0.85[EUR][1000 genomes]
rs7271579	0.85[EUR][1000 genomes]
rs73141258	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53084800-53091800	Weak transcription	Aorta	Aorta
2	chr20:53086000-53086400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr20:53086000-53086600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr20:53086000-53086800	Enhancers	Psoas Muscle	Psoas
5	chr20:53086000-53086800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr20:53086000-53087200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr20:53086200-53086600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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