Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53163705..53166182-chr20:53220873..53222587,2	MCF-7	breast:
2	chr20:53116883..53119572-chr20:53164546..53167023,3	MCF-7	breast:
3	chr20:52568956..52571954-chr20:53164781..53166681,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16999764	0.90[ASN][1000 genomes]
rs16999772	0.81[EUR][1000 genomes]
rs2426522	0.85[AMR][1000 genomes]
rs2426529	0.92[AMR][1000 genomes]
rs2426530	0.92[AMR][1000 genomes]
rs2426536	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6014050	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6014052	0.81[ASN][1000 genomes]
rs6014053	0.81[ASN][1000 genomes]
rs6023344	0.87[AMR][1000 genomes]
rs6023357	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6098064	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6098074	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62214421	0.91[ASN][1000 genomes]
rs62214425	0.81[EUR][1000 genomes]
rs726770	0.92[AMR][1000 genomes]
rs7272302	0.84[EUR][1000 genomes]
rs7274532	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8117905	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs974461	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9917433	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53161600-53165400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:53162200-53172600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr20:53162400-53165400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:53162400-53171600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr20:53162600-53166000	Weak transcription	NH-A	brain
6	chr20:53163400-53165200	Weak transcription	Fetal Brain Male	brain
7	chr20:53163400-53165400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:53163600-53166000	Weak transcription	Osteobl	bone
9	chr20:53163800-53165400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr20:53164000-53167800	Enhancers	Fetal Brain Female	brain

Quick Search: