Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53146553..53148462-chr20:53150458..53152861,2	MCF-7	breast:
2	chr20:53149408..53151407-chr20:53151746..53153466,2	MCF-7	breast:
3	chr20:53150589..53153407-chr20:53188313..53191169,3	MCF-7	breast:
4	chr20:53148405..53152406-chr20:53153631..53156129,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485786	0.96[ASN][1000 genomes]
rs16999731	0.85[ASN][1000 genomes]
rs16999736	0.96[ASN][1000 genomes]
rs2426521	0.81[ASN][1000 genomes]
rs2426522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2426525	0.98[ASN][1000 genomes]
rs2426526	0.96[ASN][1000 genomes]
rs2426529	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2426530	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2426531	0.98[ASN][1000 genomes]
rs2426535	1.00[ASN][1000 genomes]
rs2426536	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57402636	1.00[ASN][1000 genomes]
rs6014049	0.87[AMR][1000 genomes]
rs6023341	0.93[EUR][1000 genomes]
rs6023342	0.93[EUR][1000 genomes]
rs6091909	0.98[ASN][1000 genomes]
rs6098044	0.96[ASN][1000 genomes]
rs6098064	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6098074	0.87[AMR][1000 genomes]
rs67854575	0.93[EUR][1000 genomes]
rs726770	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7272302	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7274532	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276924	0.98[ASN][1000 genomes]
rs8117905	0.82[AMR][1000 genomes]
rs8126261	0.96[ASN][1000 genomes]
rs974461	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53149000-53151200	Weak transcription	Fetal Brain Female	brain
2	chr20:53149400-53151200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:53149600-53150800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr20:53150000-53151600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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