Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53156247..53159030-chr20:53207905..53210623,2	MCF-7	breast:
2	chr20:53156431..53159299-chr20:53159745..53162526,2	MCF-7	breast:
3	chr20:53151757..53155024-chr20:53157486..53161432,6	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485786	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16999731	0.85[ASN][1000 genomes]
rs16999732	0.91[AMR][1000 genomes]
rs16999736	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2426521	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2426522	0.88[ASN][1000 genomes]
rs2426525	0.98[ASN][1000 genomes]
rs2426526	0.96[ASN][1000 genomes]
rs2426529	1.00[ASN][1000 genomes]
rs2426530	0.98[ASN][1000 genomes]
rs2426531	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2426536	1.00[ASN][1000 genomes]
rs57402636	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023344	1.00[ASN][1000 genomes]
rs6091909	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6098044	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6098064	1.00[ASN][1000 genomes]
rs726770	0.96[ASN][1000 genomes]
rs7272302	1.00[ASN][1000 genomes]
rs7274532	1.00[ASN][1000 genomes]
rs73276924	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8126261	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974461	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53153000-53161800	Weak transcription	Osteobl	bone

Quick Search: