Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53149408..53151407-chr20:53151746..53153466,2	MCF-7	breast:
2	chr20:53151757..53155024-chr20:53157486..53161432,6	MCF-7	breast:
3	chr20:53072388..53074660-chr20:53151314..53154004,2	MCF-7	breast:
4	chr20:53136461..53138913-chr20:53151347..53153819,2	MCF-7	breast:
5	chr20:53150589..53153407-chr20:53188313..53191169,3	MCF-7	breast:
6	chr20:53151691..53153238-chr20:53161258..53162843,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485786	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16999731	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16999732	0.80[AMR][1000 genomes]
rs16999736	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2426521	0.81[ASN][1000 genomes]
rs2426522	0.88[ASN][1000 genomes]
rs2426525	0.98[ASN][1000 genomes]
rs2426526	0.96[ASN][1000 genomes]
rs2426529	1.00[ASN][1000 genomes]
rs2426530	0.98[ASN][1000 genomes]
rs2426531	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2426535	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2426536	1.00[ASN][1000 genomes]
rs6023344	1.00[ASN][1000 genomes]
rs6091909	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6098044	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6098064	1.00[ASN][1000 genomes]
rs726770	0.96[ASN][1000 genomes]
rs7272302	1.00[ASN][1000 genomes]
rs7274532	1.00[ASN][1000 genomes]
rs73276924	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8126261	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974461	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53151200-53153000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:53151200-53153000	Enhancers	Fetal Brain Female	brain
3	chr20:53151600-53153000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:53151600-53153000	Enhancers	Osteobl	bone
5	chr20:53151800-53153000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:53152800-53153200	Enhancers	Fetal Stomach	stomach
7	chr20:53153000-53153200	Weak transcription	Ovary	ovary
8	chr20:53153000-53161800	Weak transcription	Osteobl	bone

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