Variant report

Variant	rs60144760
Chromosome Location	chr3:141550314-141550315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73872350	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141544800-141550800	Weak transcription	Right Atrium	heart
2	chr3:141547000-141550600	Enhancers	Hela-S3	cervix
3	chr3:141547200-141550600	Enhancers	HMEC	breast
4	chr3:141548000-141550400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:141548000-141550800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:141548200-141550400	Weak transcription	Esophagus	oesophagus
7	chr3:141548200-141550600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:141548200-141554600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:141548400-141550400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:141548400-141550400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:141549400-141550600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:141549800-141550400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:141549800-141550600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:141549800-141550800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:141549800-141564400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:141550000-141550600	Enhancers	NHEK	skin
17	chr3:141550200-141551000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:141550200-141553000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links