Variant report

Variant	rs73872350
Chromosome Location	chr3:141545833-141545834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60144760	0.86[AFR][1000 genomes]
rs73872352	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141534800-141547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141539800-141547000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:141544800-141547000	Weak transcription	NHEK	skin
4	chr3:141544800-141547200	Weak transcription	HMEC	breast
5	chr3:141544800-141547200	Weak transcription	HSMM	muscle
6	chr3:141544800-141547800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:141544800-141547800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:141544800-141547800	Weak transcription	Esophagus	oesophagus
9	chr3:141544800-141550800	Weak transcription	Right Atrium	heart
10	chr3:141545000-141547000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:141545000-141547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:141545000-141547200	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:141545000-141547800	Weak transcription	Psoas Muscle	Psoas
14	chr3:141545600-141547200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:141545800-141547000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links