Variant report

Variant	rs60149019
Chromosome Location	chr11:105595106-105595107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59710417	1.00[AMR][1000 genomes]
rs73627611	1.00[AMR][1000 genomes]
rs73627634	1.00[AMR][1000 genomes]
rs73627657	1.00[AMR][1000 genomes]
rs73627660	1.00[AMR][1000 genomes]
rs73627662	1.00[AMR][1000 genomes]
rs73627677	1.00[AMR][1000 genomes]
rs73627702	1.00[AMR][1000 genomes]
rs73630108	1.00[AMR][1000 genomes]
rs73636719	1.00[AMR][1000 genomes]
rs73636744	1.00[AMR][1000 genomes]
rs73636748	1.00[AMR][1000 genomes]
rs7946193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105591600-105595400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105591800-105596000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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