Variant report

Variant	rs73630108
Chromosome Location	chr11:105589310-105589311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59710417	1.00[AMR][1000 genomes]
rs60149019	1.00[AMR][1000 genomes]
rs73627611	1.00[AMR][1000 genomes]
rs73627634	1.00[AMR][1000 genomes]
rs73627657	1.00[AMR][1000 genomes]
rs73627660	1.00[AMR][1000 genomes]
rs73627662	1.00[AMR][1000 genomes]
rs73627677	1.00[AMR][1000 genomes]
rs73627702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73636719	1.00[AMR][1000 genomes]
rs73636744	1.00[AMR][1000 genomes]
rs73636748	1.00[AMR][1000 genomes]
rs7946193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105589000-105589400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr11:105589000-105589600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:105589000-105589800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:105589200-105589600	Enhancers	Fetal Kidney	kidney
6	chr11:105589200-105589800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:105589200-105589800	Enhancers	Fetal Brain Female	brain
8	chr11:105589200-105590000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:105589200-105590400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:105589200-105590400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:105589200-105590400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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