Variant report

Variant	rs6015
Chromosome Location	chr1:169519894-169519895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169519013..169520404-chr1:169662765..169663989,4	MCF-7	breast:
2	chr1:169519444..169520200-chr1:169680897..169681795,4	MCF-7	breast:
3	chr1:169519192..169520126-chr1:169680770..169681835,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188404	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10800452	0.84[ASN][1000 genomes]
rs10919184	0.84[ASN][1000 genomes]
rs10919185	0.84[ASN][1000 genomes]
rs10919187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919188	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025910	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs1557571	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1800595	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1894691	0.87[CHD][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap]
rs1894703	0.87[CHD][hapmap]
rs2301516	0.84[ASN][1000 genomes]
rs2301519	0.84[ASN][1000 genomes]
rs2301520	0.84[ASN][1000 genomes]
rs3766104	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6013	0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6018	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6024	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6027	0.87[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs6033	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708039	0.84[ASN][1000 genomes]
rs916439	0.84[ASN][1000 genomes]
rs9332583	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332601	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9332609	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9332629	0.87[CHD][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs9332661	0.87[CHD][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
3	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
5	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:169517200-169530400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:169518000-169531000	Strong transcription	HepG2	liver
11	chr1:169518400-169531000	Strong transcription	Liver	Liver
12	chr1:169519200-169523000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:169519400-169520000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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